[1] |
Lewis CM Jr, Obregón-Tito A, Tito RY , et al. The Human Microbiome Project: lessons from human genomics[J]. Trends Microbiol, 2012,20(1):1-4.
doi: 10.1016/j.tim.2011.10.004
URL
|
[2] |
Integrative HMP Research Network Consortium. The integrative human microbiome project: dynamic analysis of microbiome-host omics profiles during periods of human health and disease[J]. Cell Host Microbe, 2014,16(3):276-289.
doi: 10.1016/j.chom.2014.08.014
URL
|
[3] |
Lombard V, Golaconda Ramulu H, Drula E , et al. The carbohydrate-active enzymes database (CAZy) in 2013[J]. Nucleic Acids Res, 2014,42(D1):D490-D495.
doi: 10.1093/nar/gkt1178
URL
pmid: 24270786
|
[4] |
Cantarel BL, Lombard V, Henrissat B . Complex carbohydrate utilization by the healthy human microbiome[J]. PLoS One, 2012,7(6):e28742.
doi: 10.1371/journal.pone.0028742
URL
pmid: 22719820
|
[5] |
Cockburn DW, Koropatkin NM . Polysaccharide degradation by the intestinal microbiota and its influence on human health and disease[J]. J Mol Biol, 2016,428(16):3230-3252.
doi: 10.1016/j.jmb.2016.06.021
URL
pmid: 27393306
|
[6] |
Salyers AA, Vercellotti JR, West SE , et al. Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon[J]. Appl Environ Microb, 1977,33(2):319-322.
doi: 10.1089/mdr.2006.12.63
URL
pmid: 16584311
|
[7] |
White BA, Lamed R, Bayer EA , et al. Biomass utilization by gut microbiomes[J]. Annu Rev Microbiol, 2014,68(1):279-296.
doi: 10.4014/jmb.1904.04033
URL
pmid: 31337187
|
[8] |
Lombard V, Bernard T, Rancurel C , et al. A hierarchical classification of polysaccharide lyases for glycogenomics[J]. Biochem J, 2010,432(3):437-444.
doi: 10.1042/BJ20101185
URL
pmid: 20925655
|
[9] |
Biely P . Microbial carbohydrate esterases deacetylating plant polysaccharides[J]. Biotechnol Adv, 2012,30(6):1575-1588.
doi: 10.1016/j.biotechadv.2012.04.010
URL
|
[10] |
Zhu F, Zhang H, Wu H . Glycosyltransferase-mediated sweet modification in oral Streptococci[J]. J Dent Res, 2015,94(5):659-665.
doi: 10.1177/0022034515574865
URL
pmid: 25755271
|
[11] |
Levasseur A, Drula E, Lombard V , et al. Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes[J]. Biotechnol Biofuels, 2013,6(1):41.
doi: 10.1186/1754-6834-6-41
URL
pmid: 23514094
|
[12] |
Cantarel BL, Coutinho PM, Rancurel C , et al. The carbohydrate-active Enzymes database (CAZy): an expert resource for glycogenomics[J]. Nucleic Acids Res, 2009,37(D1):D233-D238.
doi: 10.1093/nar/gkn663
URL
pmid: 18838391
|
[13] |
Bolam DN, Koropatkin NM . Glycan recognition by the Bacteroidetes Sus-like systems[J]. Curr Opin Struc Biol, 2012,22(5):563-569.
doi: 10.1016/j.sbi.2012.06.006
URL
|
[14] |
Martens EC, Lowe EC, Chiang H , et al. Recognition and degradation of plant cell wall polysaccharides by two human gut symbionts[J]. PLoS Biol, 2011,9(12):e1001221.
doi: 10.1371/journal.pbio.1001221
URL
pmid: 22205877
|
[15] |
Ndeh D, Rogowski A, Cartmell A , et al. Complex pectin metabolism by gut bacteria reveals novel catalytic functions[J]. Nature, 2017,544(7648):65-70.
doi: 10.1038/nature21725
URL
pmid: 28329766
|
[16] |
Pokusaeva K ,Fitzgerald GF, van Sinderen D. Carbohydrate metabolism in bifidobacteria[J]. Genes Nutr, 2011,6(3):285-306.
doi: 10.1007/s12263-010-0206-6
URL
|
[17] |
Mahowald MA, Rey FE, Seedorf H , et al. Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla[J]. Proc Natl Acad Sci USA, 2009,106(14):5859-5864.
doi: 10.1073/pnas.0901529106
URL
pmid: 19321416
|
[18] |
Rakoff-Nahoum S, Foster KR, Comstock LE . The evolution of cooperation within the gut microbiota[J]. Nature, 2016,533(7602):255-259.
doi: 10.1038/nature17626
URL
pmid: 27111508
|
[19] |
Rivière A, Gagnon M, Weckx S , et al. Mutual cross-feeding interactions between Bifidobacterium longum subsp. longum NCC2705 and Eubacterium rectale ATCC 33656 explain the bifidogenic and butyrogenic effects of arabinoxylan oligosaccharides[J]. Appl Environ Microb, 2015,81(22):7767-7781.
doi: 10.1128/AEM.02089-15
URL
pmid: 26319874
|
[20] |
Munoz-Munoz J, Cartmell A, Terrapon N , et al. An evolutionarily distinct family of polysaccharide lyases removes rhamnose capping of complex arabinogalactan proteins[J]. J Biol Chem, 2017,292(32):13271-13283.
doi: 10.1074/jbc.M117.794578
URL
pmid: 28637865
|
[21] |
Crost EH, Tailford LE, Le Gall G , et al. Utilisation of mucin glycans by the human gut symbiont Ruminococcus gnavus is strain-dependent[J]. PLoS One, 2013,8(10):e76341.
doi: 10.1371/journal.pone.0076341
URL
pmid: 24204617
|
[22] |
Fuhrer A, Sprenger N, Kurakevich E , et al. Milk sialyllactose influences colitis in mice through selective intestinal bacterial colonization[J]. J Exp Med, 2010,207(13):2843-2854.
doi: 10.1084/jem.20101098
URL
pmid: 21098096
|
[23] |
Schwartz S, Friedberg I, Ivanov IV , et al. A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response[J]. Genome Biol, 2012,13(4):R32.
doi: 10.1186/gb-2012-13-4-r32
URL
pmid: 22546241
|
[24] |
Tap J, Furet JP, Bensaada M , et al. Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults[J]. Environ Microbiol, 2015,17(12):4954-4964.
doi: 10.1111/1462-2920.13006
URL
pmid: 26235304
|
[25] |
Zhao LP, Zhang F, Ding XY , et al. Gut bacteria selectively promoted by dietary fibers alleviate type 2 diabetes[J]. Science, 2018,359(6380):1151-1156.
doi: 10.1126/science.aao5774
URL
pmid: 29590046
|
[26] |
Bhattacharya T, Ghosh TS, Mande SS . Global profiling of carbohydrate active enzymes in human gut microbiome[J]. PLoS One, 2015,10(11):e0142038.
doi: 10.1371/journal.pone.0142038
URL
pmid: 26544883
|
[27] |
Hernández E, Bargiela R, Diez MS , et al. Functional consequences of microbial shifts in the human gastrointestinal tract linked to antibiotic treatment and obesity[J]. Gut Microbes, 2013,4(4):306-315.
doi: 10.4161/gmic.25321
URL
pmid: 23782552
|
[28] |
Rouzbehan S, Moein S, Homaei A , et al. Kinetics of α-glucosidase inhibition by different fractions of three species of Labiatae extracts: a new diabetes treatment model[J]. Pharm Biol, 2017,55(1):1483-1488.
doi: 10.1080/13880209.2017.1306569
URL
pmid: 28367665
|
[29] |
Ladevèze S, Tarquis L, Cecchini DA , et al. Role of glycoside phosphorylases in mannose foraging by human gut bacteria[J]. J Biol Chem, 2013,288(45):32370-32383.
doi: 10.1074/jbc.M113.483628
URL
pmid: 24043624
|
[30] |
Davies GJ, Williams SJ . Carbohydrate-active enzymes: sequences, shapes, contortions and cells[J]. Biochem Soc Trans, 2016,44(1):79-87.
doi: 10.1042/BST20150186
URL
pmid: 26862192
|
[31] |
Christiansen MN, Chik J, Lee L , et al. Cell surface protein glycosylation in cancer[J]. Proteomics, 2014,14(4/5):525-546.
doi: 10.1002/pmic.201300387
URL
pmid: 24339177
|
[32] |
Rudney JD, Xie H, Rhodus NL , et al. A metaproteomic analysis of the human salivary microbiota by three-dimensional peptide fractionation and tandem mass spectrometry[J]. Mol Oral Microbiol, 2010,25(1):38-49.
doi: 10.1111/j.2041-1014.2009.00558.x
URL
pmid: 20331792
|
[33] |
Zhou Y, Yang JH, Zhang LX , et al. Differential utilization of basic proline-rich glycoproteins during growth of oral bacteria in saliva[J]. Appl Environ Microb, 2016,82(17):5249-5258.
doi: 10.1128/AEM.01111-16
URL
pmid: 27316966
|
[34] |
Honma K, Ruscitto A, Frey AM , et al. Sialic acid transporter NanT participates in Tannerella forsythia biofilm formation and survival on epithelial cells[J]. Microb Pathog, 2016,94:12-20.
doi: 10.1016/j.micpath.2015.08.012
URL
pmid: 26318875
|
[35] |
Roy S, Honma K, Douglas CW , et al. Role of sialidase in glycoprotein utilization by Tannerella forsythia[J]. Microbiology, 2011,157(11):3195-3202.
doi: 10.1099/mic.0.052498-0
URL
pmid: 21885482
|